List of open-source bioinformatics software ~ Teknologi Informasi ~ 1 2242 ~ m.kelas-karyawan-sebi.prestasi.web.id

This is a list of open-source bioinformatics software with articles in Wikipedia.

Software	Description	Resources	Platform	License	Developer
.NET Bio	A language-neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists.	Website	.NET Framework	Apache License	Collaborative project
Anduril	Component-based workflow framework for data analysis	Website	Linux, Mac OS X, Windows	GPL	University of Helsinki
Armadillo workflow platform	Tool for designing and executing phylogenetic workflows	Website	Mac OS X, Windows	General Public Licence (GPL)	Armadillo
AutoDock	suite of automated docking tools	Website	Platform	GNU GPL	Developer
Biochemical Algorithms Library (BALL)	C++ library and framework for molecular modeling and visualization designed for rapid prototyping	Website – Articles	Linux, Mac OS X, Windows	LGPL	BALL project team
Bio4j	Bio4j is a bioinformatics platform and graph based database built around most data available in UniProt KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy Enzyme DB	Website	Cross-platform	GPL v3	Oh no sequences!
Bioclipse	Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).	Website	Platform	Eclipse Public License	The Bioclipse Project
Bioconductor	R (programming language) language toolkit	Website – Articles	Linux, Mac OS X, Windows	Artistic License 2.0	Fred Hutchinson Cancer Research Center
Bioinformatics Learning Tutorial (BLT)	Educational interactive tutorials and 3D animations for Replication, Transcription, and Translation	Project Home – Download for Windows	Windows (stand-alone), Linux & Mac OS X (source code only with Qt libraries)	Academic Free License	Collaborative project
BioHaskell	Haskell (programming language)	Project web site – Bioinformatics software in Haskell	Linux, Mac OS X, Windows	GPL, LGPL, and BSD	Collaborative project
BioJava	Java (programming language)	Website	Linux, Mac OS X, Windows	LGPL v2.1	Open Bioinformatics Foundation
BioMOBY	registry of web services	Website – Articles	Web	License	Open Bioinformatics Foundation
BioPerl	Perl language toolkit	Website	Cross-platform	Artistic License & GPL	Open Bioinformatics Foundation
BioPHP	PHP language toolkit	Website	Platform	License	Open Bioinformatics Foundation
Biopython	Python language toolkit	Website	Cross-platform	Biopython License	Open Bioinformatics Foundation
BioRails	a data management system designed to support researchers in drug discovery	Website	Platform	License	Developer
BioRuby	Ruby language toolkit	Website	Platform	GNU GPL v2 or Ruby license	Open Bioinformatics Foundation
BioSmalltalk	Smalltalk language toolkit	Website	Cross-platform	MIT license	Developer
BioUno	BioUno is a project that applies Continuous Integration tools and techniques in Bioinformatics. It uses Jenkins and its plug-in API to create biology workflows and manage computer clusters.	Website	Cross-platform	MIT license	TupiLabs
caCORE	ontologic representation environment	Website – Articles	Platform	License	National Cancer Institute
caArray	ontologic representation environment	[1] – [2]	Platform	License	National Cancer Institute
EMBOSS	Suite of packages for sequencing, searching, etc.	Website	Platform	General Public Licence (GPL) and Library GPL	Collaborative project
Gaggle	A framework for interoperability between systems biology software	Website – Paper – Firegoose paper	Linux, Mac OS X, Windows	LGPL	Institute for Systems Biology
Galaxy	Scientific workflow and data integration system	Website	Unix-like	License	Penn State and Emory University
GenePattern	Scientific workflow system that provides access to more than 150 genomic analysis tools	Website	Unix-like (public server); Linux, Mac OS X, Windows	MIT license	Broad Institute
GMOD	Toolkit for addressing many common challenges at biological databases.	Website	Unix-like (server), Web browser (client)	Varies depending on tool	Collaborative project
GenGIS	Application that allows users to combine digital map data with information about biological sequences collected from the environment.	Website	Windows, Mac OS X	GPL	Collaborative project
GenomeSpace	Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools	Website	Web browser	LGPL	Broad Institute, Collaborative project
GENtle	An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files	Website	Platform	GPL	Magnus Manske
Integrated Genome Browser	Java-based desktop genome browser	Website	Linux, Mac OS X, Windows	CPL 1.0	GenoViz
Integrative Genomics Viewer (IGV)	High-performance desktop tool for interactive visual exploration of diverse genomic data	Website	Linux, Mac OS X, Windows	LGPL	Broad Institute
IntAct	molecular interaction database	Website – Articles	Platform	License	European Bioinformatics Institute
InterMine	Extensive data warehouse system for the analysis and integration of biological datasets	Website	Cross-platform	LGPL	University of Cambridge
Java Treeview	microarray data viewer	Website – Articles	Cross-platform	License	Developer
LabKey Server	platform for integrating, analyzing and sharing data	Website	Linux, Mac OS X, Windows	Apache License	LabKey Software Foundation
OpenClinica	software for capturing and managing data in clinical trials	Website	Linux, Windows	LGPL	OpenClinica
PromKappa	PromKappa (Promoter analysis by Kappa) software program used for promoter pattern generation and promoter analysis.	Download here.	Windows	Open access	University of Bucharest
MeV: Multi-Experiment Viewer	a desktop application for the analysis, visualization and data-mining of large-scale genomic data	website	Linux, Mac OS X, Windows	Artistic License	Dana-Farber Cancer Institute
REDCRAFT	software for determining tertiary protein structure given assigned Residual Dipolar Coupling data	Website	Linux, Mac OS X, Windows	GPL v3	REDCRAFT
SAM Tools	Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments	Website	Linux	BSD, MIT License	1000 Genomes Project
Staden Package	Sequence assembly, editing and analysis, primarily consisting of gap4, gap5 and spin.	Website	Linux, Mac OS X, Windows	BSD	Wellcome Trust Sanger Institute / Medical Research Council
STAMP	Software package for analyzing metagenomic profiles that promotes ‘best practices’ in choosing appropriate statistical techniques and reporting results.	Website	Windows, Mac OS X	GPL	Collaborative project
Taverna workbench	Tool for designing and executing workflows	Website	Linux, Mac OS X, Windows	LGPL	myGrid
T-REX WebServer	Bioinformatics and phylogenetics webserver (NJ, PhyML, RAxML, MAFFT, MUSCLE, Newick viewer, Horizontal gene transfer detection, Reticulograms, Substitution models)	Website	Web platform	Academic Free License	T-REX
UGENE	integrated bioinformatics tools	Website – Podcast	Linux, Mac OS X, Windows	GPL2 License	Unipro
Visomics	bioinformatics tools for omics data	Website	Windows	Apache 2.0 License	Collaborative Project

Daftar/Tabel -- open-source bioinformatics software

See also

External links